bcl2fastq

Demultiplexing pipeline for sequencing data

for split fastq from mix bcl or fastq data by barcode/index

RNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls

A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

Nextflow pipeline for Illumina NGS demultiplexing

An awesome BCL demultiplexing and FastQ quality-control pipeline

Workflow for Illumina's bcl2fastq

a shiny frontend for the nextflow-bcl pipeline

Pure-Groovy Nextflow sub-workflow that reads an Illumina samplesheet (bcl2fastq or Local Run Manager format) and emits a generic nf-core samplesheet (sample,fastq_1,fastq_2). No runtime dependencies beyond Nextflow itself.

Demultiplexing pipeline for sequencing data

bcl2fastq by Illumina