Parse Illumina sample sheets with Python
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Mar 20, 2024 - Python
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samplesheet
Here are 9 public repositories matching this topic...
Params validation plugin for Nextflow pipelines
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Aug 7, 2024 - Groovy
A sample sheet generator for Illumina sequencing
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Aug 3, 2025 - CSS
Utility script(s) used for creating samplesheets from various sources
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Sep 26, 2025 - Python
Very simple Illumina SampleSheet validation in Rust. Make your biologists check their own custom SampleSheets! Can be compiled for Windows users.
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Dec 3, 2022 - Rust
I/O and models in type-annotated Python for NGS sample sheets: Illumina and Aviti
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Sep 17, 2026 - Python
A package to validate the formatting of Illumina SampleSheets and which notifies the user of any issues
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Feb 4, 2026 - Python
Pure-Groovy Nextflow sub-workflow that reads an Illumina samplesheet (bcl2fastq or Local Run Manager format) and emits a generic nf-core samplesheet (sample,fastq_1,fastq_2). No runtime dependencies beyond Nextflow itself.
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Oct 6, 2026 - Groovy
Read-only preflight checks that reconcile sequencing sample sheets with FASTQ files on disk.
python bioinformatics quality-control data-validation sequencing command-line-tool fastq samplesheet
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Oct 3, 2026 - Python
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