Absolute solvation free energy calculations with OpenFF and OpenMM
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Dec 1, 2024 - Python
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non-equilibrium
Here are 18 public repositories matching this topic...
Python solver for the Brownian, Stochastic, or Noisy Differential Equations
langevin oscillator stochastic-differential-equations stochastic-processes random-walk noise-maps ode-solver langevin-equations langevin-dynamics runge-kutta-methods euler-method non-equilibrium brownian-motion brownian-dynamics langevin-diffusion perturbation-analysis midpoint-method noisy-differential-equations ode-solver-stochastic noisy-systems
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Jul 12, 2018 - Python
A non-equilibrium dynamical mean-field theory engine in Julia
non-equilibrium dynamical-mean-field-theory strongly-correlated-systems ultrafast-dynamics kadanoff-baym
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Jan 19, 2026 - Julia
Archive for post-biological frameworks: 21+ architectures encompassing 26D interference, NECF, BSHDER, and AION genomic entropy reversal. Mapping the intersection of recursive Hebbian organisms and latent-consensus manifolds.
machine-learning deep-learning signal-processing information-theory agi eeg quantum-computing eeg-signals cognitive-science multi-agent-systems non-equilibrium mixture-of-experts wave-interference physics-informed-neural-networks bio-inspired-computing harmonic-resonance
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Oct 3, 2026 - Python
Toolkit for quantifying errors in non-equilibrium data
biochemistry biophysics non-equilibrium free-energy-calculations free-energy-surface jarzynski-equality
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Sep 22, 2022 - Python
Simulation of Photonic Condensates
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Jun 14, 2025 - Python
Markovian-dynamics is a Python package built to simplify dynamics calculations in thermodynamic systems.
physics thermodynamics non-equilibrium master-equation markovian-dynamics rate-matrix detailed-balance arrhenius-process
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Apr 13, 2019 - Python
Numerical simulation of non-equilibrium dynamics of Majorana fermions with all-to-all interactions
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Mar 10, 2019 - C++
A Python library for rare dynamical event sampling in non-equilibrium systems using Transition Path Sampling (RTP-TPS) and Variational Path Sampling (VPS).
python dynamical-systems non-equilibrium rare-events transition-path-sampling variational-path-sampling
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Jan 31, 2026 - Python
A lightweight toolkit for auditing non-equilibrium transitions and structural collapse in complex time-series data. Features dual-branch DSP (LF/HF), interpretable metrics, and an interactive browser UI.
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Mar 11, 2026 - HTML
Reduced Order modeling for Non-Equilibrium Kinetics
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Jul 14, 2025 - Python
Monte Carlo study of phase transitions, hysteresis, and finite-size scaling in interacting many-body systems.
research monte-carlo computational-physics complex-systems statistical-physics non-equilibrium phase-transitions finite-size-scaling
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Dec 20, 2025 - Jupyter Notebook
MPA protocols and framework: v9, RFC sequence (spec object, scale management), architectural block-in.
complexity theoretical-physics statistical-physics spin-glass non-equilibrium quantum-error-correction dissipative-systems fluctuation-dissipation
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Jun 2, 2026
A cross-layer emergence condition where flow (time-like phenomena) arises when retained differences cannot disappear across Field, Embodiment, Sentia, and RET.
topology field-theory non-equilibrium ret continuity sentia embodiment structural-emergence irreversibility ret-flow-condition flow-condition time-emergence delta-retention cross-layer-condition
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Apr 28, 2026
Compute useful internal structure (C_u) for thermodynamic intelligence. Exact IB-optimal toy + neural network validation.
machine-learning intelligence entropy physics information-theory thermodynamics neural-networks complexity mutual-information non-equilibrium information-bottleneck rate-distortion adaptive-systems semantic-information landauer-principle
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Sep 22, 2026 - Python
Code repository associated to the "Feedback protocols for dissipation control in small systems" publication.
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Oct 2, 2026 - Python
Claim-bounded reduced-surrogate archive for Socio-Traffic Thermodynamics: stop-and-go waves, synchronization risk, and risk-budgeted information release in toy traffic networks. No policy or deployment claim.
transportation traffic-simulation traffic-flow non-equilibrium information-design traffic-congestion science-education routing-games toy-model claim-boundary risk-budget stop-and-go-waves optimal-velocity-model synchronization-risk
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Jun 4, 2026 - TeX
Does a will to live evolve in self-repairing neural networks? A rigorous NESS investigation + a margin-triggered proactive-repair monitor for real models.
machine-learning deep-learning pytorch neural-networks artificial-life evolutionary-computation self-healing online-learning concept-drift ai-safety non-equilibrium continual-learning ai-alignment model-monitoring
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Sep 3, 2026 - Python
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