ivar

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Here are 5 public repositories matching this topic...

UPHL-BioNGS / Cecret

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Reference-based consensus creation

Updated Sep 1, 2026
Nextflow

aleponce4 / viral-intrahost-variant-workflow

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Containerized Nextflow DSL2 workflow for viral intra-host variant calling (iSNV), quasispecies haplotype reconstruction, and evolutionary selection analysis.

bioinformatics nextflow quasispecies variant-calling viral-genomics ivar nextflow-dsl2 lofreq

Updated Aug 26, 2026
Python

swelham / ivar_httpoison

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An HTTPoison adapter for the Ivar HTTP client

elixir httpoison http-adapter ivar

Updated Nov 4, 2018
Elixir

0xNF / Ellen

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Saves Gorilla IVAR data to a local excel or sqllite file, with pictures

python flask sqlite xlsx ivar

Updated Aug 22, 2020
JavaScript

jeremyButtler / artic-reference-benchmark

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My goal is to see how the choice of a reference genome affects the artic pipelines accuracy.

benchmarking virus sequencing ivar lilo artic sars-cov-2 tilling-primers

Updated Oct 11, 2023
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