Issues

• prepare_transcripts: build pyfasta .gdx/.flat sidecars eagerly so downstream tasks don't write to staged inputs

  xryanglab/RiboCode#70 · Filter by author pinin4fjords opened on May 19, 2026

• ValueError: Can't transform the genomic interval, please check!

  xryanglab/RiboCode#69 · Filter by author koosle opened on May 14, 2025

• prepare_transcripts

  xryanglab/RiboCode#68 · Filter by author 123jjhy opened on May 5, 2025
  1

• How does RiboCode deal with Harringtonine treated data?

  xryanglab/RiboCode#67 · Filter by author danielrebib opened on Mar 25, 2025

• Error about metaplots

  xryanglab/RiboCode#66 · Filter by author Shuang1248 opened on Jan 11, 2025

• pvalue cutoff changes the predicted p-site, which is detected at site that is not the peak in metplot function

  xryanglab/RiboCode#65 · Filter by author dougbarrows opened on Sep 11, 2024

• metaplot import error Python 3.10

  xryanglab/RiboCode#64 · Filter by author ericmalekos opened on Jun 23, 2024

• Question on handling multimappers

  xryanglab/RiboCode#63 · Filter by author mosi223 opened on Apr 16, 2024
  2

• No obviously periodicity are detected from bam file when running metaplots step

  xryanglab/RiboCode#62 · Filter by author DooYal opened on Mar 29, 2024
  3

• No R script supp

  xryanglab/RiboCode#61 · Filter by author rabc9 opened on Feb 29, 2024

• Incorrect handling of hdf5 file for repeated runs of RiboCode

  xryanglab/RiboCode#59 · Filter by author jdcla opened on Dec 4, 2023

• RiboCode nf-core module

  xryanglab/RiboCode#58 · Filter by author JackCurragh opened on Oct 20, 2023

• h5py TypeError: No conversion path for dtype: dtype('<U18')

  xryanglab/RiboCode#57 · Filter by author huipan1973 opened on Jul 20, 2023

• psites_number table is not generated with v1.2.15

  xryanglab/RiboCode#55 · Filter by author hsinyenwu opened on May 18, 2023
  1

• ValueError: unsupported pickle protocol: 5 in metaplots

  xryanglab/RiboCode#54 · Filter by author z626093820 opened on Apr 28, 2023
  1

• ModuleNotFoundError: No module named 'fasta'

  xryanglab/RiboCode#53 · Filter by author fulaibaowang opened on Mar 27, 2023
  8

• different transcripts of one gene

  xryanglab/RiboCode#52 · Filter by author yx-xu opened on Nov 22, 2022

• Question on adjusted P values reported in collapsed output

  xryanglab/RiboCode#51 · Filter by author mt1022 opened on Aug 16, 2022
  2

• remove PCR duplicate

  xryanglab/RiboCode#47 · Filter by author yx-xu opened on Jul 21, 2022
  2

• Empty "transcripts_cds.txt" file

  xryanglab/RiboCode#46 · Filter by author huguanjing opened on Jun 8, 2022
  1

• 请问关于ORF预测结果中‘Psites_frame0_RPKM’代表什么意思？

  xryanglab/RiboCode#45 · Filter by author z626093820 opened on Jun 8, 2022
  4

• error in metaplots step

  xryanglab/RiboCode#43 · Filter by author hugch2020 opened on May 27, 2022
  1

• Whether multiple mapping affect ribocode result

  xryanglab/RiboCode#42 · Filter by author Hilarialy opened on May 12, 2022
  1

• RiboCode_onestep crashes when calling detectORF

  xryanglab/RiboCode#41 · Filter by author trum994 opened on May 11, 2022
  1

• can't locate attribute: psites_number

  xryanglab/RiboCode#40 · Filter by author trum994 opened on May 9, 2022
  1