Issues

• installation w/ conda failed in Ubuntu 22.04.4 LTS

  uym2/TreeShrink#45 · Filter by author bernardo1963 opened on Apr 10, 2025

• No module named treeshrink.sequence_lib

  uym2/TreeShrink#43 · Filter by author BioinfoAK opened on Jan 24, 2024
  1

• removes taxa on short branches

  uym2/TreeShrink#39 · Filter by author bmichanderson opened on Apr 26, 2023
  3

• 'treeshrink' is not a package

  uym2/TreeShrink#38 · Filter by author theo-allnutt-bioinformatics opened on Apr 20, 2023

• Failed with error in density.default

  uym2/TreeShrink#37 · Filter by author mesti90 opened on Mar 8, 2023
  1

• Failed with error: ‘cannot read workspace version 3 written by R 4.0.3; need R 3.5.0 or newer’

  uym2/TreeShrink#35 · Filter by author Ofsm opened on Sep 22, 2022
  1

• Error in running example dataset

  uym2/TreeShrink#34 · Filter by author FrancisNge opened on Aug 26, 2022
  3

• What are the criteria for adjusting q？

  uym2/TreeShrink#32 · Filter by author Dream-sugar opened on Dec 10, 2021
  2

• Single gene - delete long branch

  uym2/TreeShrink#30 · Filter by author Lcornet opened on Mar 24, 2021
  1

• Subset loci.treefile

  uym2/TreeShrink#29 · Filter by author herber4 opened on Mar 10, 2021
  1

• Python and R version compatibility

  uym2/TreeShrink#28 · Filter by author wlhamilton opened on Dec 3, 2020
  4

• Partitioning by clade

  uym2/TreeShrink#27 · Filter by author BenKuhnhaeuser opened on Nov 12, 2020
  1

• Deleting node support values

  uym2/TreeShrink#26 · Filter by author PeteCowman opened on Nov 12, 2020

• No support values in output trees

  uym2/TreeShrink#25 · Filter by author PeteCowman opened on Nov 12, 2020
  1

• Can R v4 be used?

  uym2/TreeShrink#21 · Filter by author baileyp1 opened on Jun 19, 2020
  3

• Error in rank(x, ties.method = "min", na.last = "keep") : unimplemented type 'list' in 'greater'

  uym2/TreeShrink#14 · Filter by author adityabandla opened on Jun 8, 2020
  6

• Node label transfer error at rooting point

  uym2/TreeShrink#9 · Filter by author dfmoralesb opened on May 14, 2019
  4