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@usadellab

usadellab

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  1. Trimmomatic Trimmomatic Public

    Java 322 84

  2. Helixer Helixer Public

    Using Deep Learning to predict gene annotations

    Python 308 37

  3. gfftk gfftk Public

    GFF toolkit to work with GFF files

    C++ 4

  4. HelixerPost HelixerPost Public

    Rust 10 8

Repositories

Showing 10 of 31 repositories
  • Helixer Public

    Using Deep Learning to predict gene annotations

    usadellab/Helixer's past year of commit activity
    Python 308 GPL-3.0 37 28 6 Updated Oct 6, 2026
  • pubplant2schemaorg Public

    This repository automates the transformation of genomic metadata from PubPlant into Schema.org/Dataset JSON-LD.

    usadellab/pubplant2schemaorg's past year of commit activity
    Python 0 0 0 0 Updated Oct 6, 2026
  • ChloroFORGE Public

    Reassemble chloroplast genomes from precomputed assemblies

    usadellab/ChloroFORGE's past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Sep 28, 2026
  • Trimmomatic Public
    usadellab/Trimmomatic's past year of commit activity
    Java 322 84 4 0 Updated Sep 28, 2026
  • dmp-eva Public

    An AI-assisted front-end DMP evaluation tool

    usadellab/dmp-eva's past year of commit activity
    JavaScript 6 MIT 1 0 0 Updated Sep 7, 2026
  • hifiasm Public Forked from chhylp123/hifiasm

    fork of Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

    usadellab/hifiasm's past year of commit activity
    C++ 0 MIT 132 0 0 Updated Aug 14, 2026
  • ScorpionSubmission Public

    Using APIs to get KPIs from Matomo and Google Scholar and submit them to Scorpion (de.NBI)

    usadellab/ScorpionSubmission's past year of commit activity
    Python 3 MIT 0 0 0 Updated Aug 3, 2026
  • helixer-docker Public
    usadellab/helixer-docker's past year of commit activity
    Dockerfile 12 MIT 4 5 1 Updated Jul 1, 2026
  • HelixerPost Public
    usadellab/HelixerPost's past year of commit activity
    Rust 10 GPL-3.0 8 9 4 Updated Jul 1, 2026
  • trimmomatic-validation-2026 Public
    usadellab/trimmomatic-validation-2026's past year of commit activity
    Shell 0 MIT 0 0 0 Updated May 11, 2026
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