stringdb

StringDB is a modular, key/value pair archival DB designed to consume *tiny* amounts of ram & produce *tiny* databases.

Research compendium for Viscardi et al, 2020.

Functional impact of cancer-specific isoform switching events: Visualization via STRING interaction network

Additional utilities for [STRINGdb](https://www.bioconductor.org/packages/release/bioc/html/STRINGdb.html).

Gexplora - user-interface to analyse genomic elements along chromosomes

A pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).

Customize your specific organism cellchatdb

This code was written and used to perform the comparative interactome analysis of β-arrestin1 and 2.

This repository includes scripts, data, and documentation for analyzing Bulk RNA-seq data from NCBI GEO, supporting journal paper preparation in alignment with course requirements.

An R client for STRING API

proteINET is a small toolkit to fetch, analyze and visualize protein–protein interaction (PPI) networks using the STRING database.

Raw scripts for annotation, Venn, heatmap, STRINGdb, and machine learning (ML) workflows.

This repository showcases bioinformatics analysis and visualization results from an independent project for a scientific writing course, utilizing iDEP and a microarray dataset derived from NCBI GEO.

This repository contains the scripts of Functional and Global Network Analysis via stringDB