splicing

Implementation of AlphaGenome, Deepmind's updated genomic attention model

Image Forgery Detection using Deep learning Graduation project

Groundtruth images of tampering dataset CASIA 1.0

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

✂️ Deep learning-based splice site predictor that improves spliced alignments

FRASER - Find RAre Splicing Events in RNA-seq

A python package and a set of shell commands to handle GTF files

Tissue-specific variant effect predictions on splicing

Better Alignments with Translated HMMER

Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation

Snakemake-based computational workflow for neoantigen prediction from diverse sources

Detecting Aberrant Splicing Events from RNA-sequencing data

Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.

Splicing Prediction Pipeline

10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/

A Nextflow pipeline for end-to-end long-read proteogenomics analysis

An online database of variants functionally demonstrated to affect (or not affect) splicing.

SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.

🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.

Genome-wide detection of human variants that disrupt intronic branchpoints