seaflow

Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

Python package with library and CLI tool for analyzing SeaFlow data

Size-structured matrix population model for Prochlorococcus

cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indice…

Conversion from light scattering measured by SeaFlow to cell diameter

Size-structured matrix population model for SeaFlow data

SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.

Conversion from light scattering measured by SeaFlow to carbon per cell

Calibration of SeaFlow's Virtual Core

Evidence exploration and discipline for SeaFlow: coverage, insufficiency, retrieval-risk signals, semantic outputs, and controlled evidence workspaces.

Temporal evidence orchestration for SeaFlow: event ordering, evidence states, temporal gaps, and auditable recovery planning.

Provenance-aware evidence graphs for SeaFlow: typed nodes, typed relations, and auditable evidence paths.