phd-tools

42 AI agent skills for literature review, academic writing, citation verification, conference submission, rebuttal, publication, and presentations.

💬 Trace citation chains for any concept across research papers and render them as an interactive graph.

Big Research：独立第三方 AI 辅助科研插件。研究者主导问题、方法与判断，支持 Codex 和 Claude Code，提供证据追踪、本地 MCP 和交互视图。

PEPICO workstation for VMI photoelectron / ion-TOF coincidence analysis (PySide6 + pyAbel): trigger pairing, TOF selection, VMI centering, Abel inversion, session round-trip.

Professional Scientific Plotting for Academic Publications - From Data to Publication-Ready Figures

PhD manuscript repetition detector & fixer, powered by Gemini AI. Finds semantic repetitions across chapters and suggests rewrites.

Trace research papers recursively to map relevant citations and build interactive knowledge graphs based on keywords or semantic similarity.

BioInfo Tools

Pure-static, local-first research workbench: literature library, calendar, submission tracking, AI assistant, API quota monitoring. Zero dependencies.

Research Paper Automation Toolkit — Python tools that automate academic workflows: extract figures from PDFs, convert papers to PowerPoint slides, export annotations, generate LaTeX figure blocks, and synchronize PNG/PDF figure formats.

Quarto extension for MANIT-style PhD thesis formatting