phase-contrast-imaging

Data processing algorithms for tomography: https://algotom.readthedocs.io

Graduate Level Course of Technical University of Munich

Electron holography reconstruction and preprocessing routines

A collection of C++ source code modules for forward and inverse simulations of Unified Tomographic Reconstruction.

Automated tracking of cell migration in phase contrast microscope images

PhasePhinder: An Open-Sourced App for Propagation-Based Phase Contrast in Lab XCT

Code for a pipeline to analyse phase contrast timelapse images of Cyanobacteria

Main page of Algotom's documentation

Active learning framework for improving cell segmentation in microscopy images using uncertainty and diversity-based sampling

Image processing software for the CERIC beamtime proposal 20217193

This project explores the inverse problem of estimating thickness from a single phase-contrast image using supervised learning on paired simulations.