overlap-graph

Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.

Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.

Computational Biology Assignments

[a.a. 23/24] A.Ture, G.Pagano

The phi X 174 bacteriophage is a single-stranded DNA virus that infects Escherichia coli (E. Coli), and the first DNA-based genome to be sequenced. This work was completed by Fred Sanger and his team in 1977. This repository contains simple assembler, different components of it and various error correction techniques for assembling Phi X 174 bac…

A framework for assembling a genome using an overlap graph, a de Bruijn graph using an ML component