Software for high density electrophysiology
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Jan 24, 2025 - Jupyter Notebook
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multi-electrode-array
Here are 9 public repositories matching this topic...
CASCADE (Criticality Avalanche Spike Cross-platform Analysis Detection Engine) is a unified Python pipeline for MEA electrophysiology analysis. Supports multiple manufacturers, detects neuronal avalanches, and computes criticality metrics including DCC, branching ratio, and shape collapse.
bioinformatics tools neuroscience hdf5 neuroinformatics hdf5-format h5 multi-electrode-array biotools
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Jul 27, 2026 - Python
Charge-balanced stimulation pulses for real stimulators (Intan, MCS, TDT): rounds biphasic pulses to the device's current and timing steps and finds exactly balanced ones.
python cli neuroscience electrophysiology brain-computer-interface mea charge-balance multi-electrode-array neurostimulation tucker-davis-technologies intan electrical-stimulation neural-interface cortical-labs microstimulation biphasic-pulse multi-channel-systems stimulation-safety
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Oct 28, 2026 - Python
Optimized spike detection based on https://github.com/mhhennig/HS2
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Apr 24, 2023 - C++
Real-time spike detection for multi-electrode arrays in Rust with Python bindings and stimulation-artifact blanking.
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Oct 27, 2026 - Rust
A Simple and Inexpensive System for Multichannel, Closed Loop Electrophysiological Experimentation
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Oct 21, 2017 - C
Offline toolkit for MEA spike detection, burst analysis, waveform metrics, and baseline–experimental electrode comparisons.
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Jul 30, 2026 - Python
Electrophysiological analysis and contraction pulse (CP) sorting from MEA recordings in Hydra vulgaris
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Oct 23, 2025 - MATLAB
Extract spike timings from Axion MEA .spk files and visualize them with rasterplots
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Oct 9, 2026 - Python
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