motion-correction

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Preprocessing of diffusion MRI

Matlab routines for online non-rigid motion correction of calcium imaging data

Compressed Sensing and Motion Correction LAB: An MR acquisition and reconstruction system

CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

FALCON is a Python-based software application designed to facilitate PET motion correction, both for head and total-body scans. Our program is built around the fast 'greedy' registration toolkit, which serves as the registration engine. With FALCON, users can enjoy a streamlined experience for implementing motion correction.

Hands-on examples for motion estimation and correction in MRI

Flow-Registration toolbox for 2P motion compensation

Temporal Derivative Distribution Repair: A motion correction method for fNIRS

Quantitative MRI toolbox in Python

A U-Net based end-to-end MRI motion correction. With/Without GAN version is available.

Free-breathing myocardial T1 mapping with Physically-Constrained Motion Correction

Python tools for MERLIN

3D motion correction and motion analysis for microscopy videos

Motion-aware vascular tracking, PSF-corrected IDIF estimation, and model-independent kinetic deconvolution for dynamic PET.

Figures for MERLIN paper and demo of pymerlin

ZenReg is a Python-based high-throughput, memory-efficient pipeline for N-dimensional image registration, designed for large microscopy and imaging datasets.

Suite of Python programs used for 1- and 2-photon calcium imaging analysis