IQ-TREE software version 2: phylogenetics by maximum likelihood
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Updated
Jul 22, 2026 - C++
IQ-TREE software version 2: phylogenetics by maximum likelihood
bedtools - the swiss army knife for genome arithmetic
A pocket volume analyzer for use in protein modeling.
Python implementation of the multistate Bennett acceptance ratio (MBAR)
A Python Package for Protein Dynamics Analysis
macromolecular crystallography library and utilities
Solvation Structure and Thermodynamic Mapping
Protein and nucleic acid validation service
Experiments with expanded ensembles to explore chemical space
Python interface of cpptraj
Computational Crystallography Toolbox
Identification of Protein-Ligand Binding Sites using dipolar EPR data
Powerful, efficient particle trajectory analysis in scientific Python.
Biomolecular simulation trajectory/data analysis.
A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.
The Open Free Energy toolkit
Dynamic pharmacophore modeling of molecular interactions
A comprehensive library for computational molecular biology
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
The second version of the Kraken taxonomic sequence classification system
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