hifiasm

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Here are 7 public repositories matching this topic...

zengxiaofei / HapHiC

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HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

genome assembly hi-c scaffolding chromosome phasing salsa lachesis t2t haplotype yahs 3d-dna allhic hifiasm

Updated Aug 10, 2026
Python

rcac-bioinformatics / genome-assembly

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Genome Assembly: Hands-on Training

genome-assembly bionano flye hifiasm

Updated Feb 19, 2026

hmkim / hpp-healthomics-pipeline

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End-to-end human genome assembly pipeline (hifiasm + DeepPolisher + YaHS + RepeatMasker + Flagger) on AWS HealthOmics, orchestrated by AWS Step Functions

bioinformatics wdl genome-assembly cdk step-functions pangenome hifiasm aws-healthomics

Updated Jun 2, 2026
WDL

rj-price / rust-assembler-nf

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Phased assembly and haplotype resolution of dikaryotic rust (Pucciniales) genomes from PacBio HiFi reads

bioinformatics nextflow hpc slurm hi-c fungi genome-assembly apptainer hifiasm haplotype-phasing pacbio-hifi rust-fungi pucciniales dikaryon

Updated Sep 17, 2026
Nextflow

vikos77 / ecoli-hifi-assembly

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hifiasm longreadsequencing hifisequencing

Updated Mar 22, 2026
Shell

katarinafloer / SparvusGenome

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De novo genome of Staurois parvus (assembly + annotation)

bioinformatics fcs busco amphibians hifiasm

Updated Jul 27, 2026
Shell

daniil-11-ger / oryza-sativa-genome-assembly

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Advanced plant genome assembly pipeline for Oryza sativa using HiFi reads, k-mer profiling (Jellyfish), and Hifiasm

genomics hpc bioinformatics-pipeline jellyfish plant-science hifiasm

Updated Jan 3, 2026
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