Platform for integrating genomic analysis with Jupyter Notebooks.
-
Updated
Jul 25, 2025 - Python
#
genepattern
Here are 12 public repositories matching this topic...
The GenePattern Server web application
-
Updated
Apr 29, 2026 - HTML
-
Updated
Jun 21, 2022 - Jupyter Notebook
Modular toolkit for data analysis pipelines used at Baylor⚕️
-
Updated
Jul 21, 2024 - TypeScript
MCP server that lets AI assistants (Claude, Cursor, Copilot) run GenePattern bioinformatics modules, manage cloud jobs, and access genomic data — all through natural language.
python docker bioinformatics ai genomics reproducible-research mcp gene-expression single-cell ucsd genepattern llm model-context-protocol fastmcp
-
Updated
Mar 25, 2026 - Python
Code used in the operation of the GenePattern Notebook Repository
-
Updated
May 18, 2022 - Python
Multi-agent AI pipeline that turns any bioinformatics CLI tool into a production-ready GenePattern module.
python bioinformatics genomics reproducible-research multi-agent scientific-computing code-generation ucsd workflow-automation genepattern ai-agents cli-tools llm pydantic-ai module-generation
-
Updated
Apr 15, 2026 - Python
A version of Single Sample GSEA adapted to the sparsity of single cell RNA-seq data
-
Updated
Aug 21, 2025 - Python
Example notebooks utilizing the GenePattern Notebook environment.
-
Updated
Oct 7, 2021 - Jupyter Notebook
Launches a GenePattern visualizer from the desktop
-
Updated
Mar 2, 2022 - Java
A standard template repository for creating GenePattern Notebook based analyses.
-
Updated
May 25, 2018 - Jupyter Notebook
Add this topic to your repo
To associate your repository with the genepattern topic, visit your repo's landing page and select "manage topics."