fastani

Here are 3 public repositories matching this topic...

Savagebd / comparative-bacterial-genomics-pipeline

Reusable comparative bacterial genomics pipeline for assembled bacterial genome FASTA files using QUAST, Bakta, FastANI, Panaroo, and FastTree.

bioinformatics comparative-genomics phylogeny quast fastani panaroo bacterial-genomics bakta genomics-pipeline

Updated May 27, 2026
Python

PopovIILab / BatShotMetaFlow

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🦇🧫📊Study on bat gut shotgun metagenomics

phylogenetics beta-diversity microbial-communities blast spades differential-abundance-analyses fastq-files refseq alpha-diversity prokka quast kraken2 abricate lab-journal maaslin2 shotgun-metagenomics fastani humann3 virsorter2

Updated May 21, 2026
Jupyter Notebook

Qasim-Hussain-Code / ppanggolin_pangenomics_helicobacter_pylori

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Graph-based pangenomic and synteny analysis of Helicobacter pylori (n=41 complete RefSeq genomes) using PPanGGOLiN, with reproducible workflows for annotation (Prokka), ANI quality control (FastANI), core-genome phylogeny (MAFFT + IQ-TREE 2), resistome profiling (AMRFinderPlus), and publication-grade visualizations.

bioinformatics microbial-genomics comparative-genomics synteny phylogenomics pangenomics mafft resistome prokka fastani bacterial-genomics amrfinderplus iqtree2 helicobacter-pylori ppanggolin

Updated Aug 4, 2026
Python

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