Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers
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Dec 12, 2020 - Jupyter Notebook
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epiestim
Here are 5 public repositories matching this topic...
Deidentified toolkit for within-outbreak measles genomics: sub-lineage transmission-structure analysis, case-based Rt (Cori et al. 2013 / EpiEstim), and BEAST2/PhyDyn tooling documenting the negative R0 result. Includes a synthetic demo dataset.
bioinformatics public-health phylodynamics measles genomic-epidemiology reproduction-number epiestim outbreak-analysis
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Sep 23, 2026 - Python
"COVID-19 Analyzer" web application for statistical analysis of COVID-19 related data. This software was created as part of my thesis engineering project.
statistics dashboard shiny data-analysis hypothesis-testing kalman-filter coronavirus covid-19 sars-cov-2 epiestim
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Apr 27, 2022 - R
📝The project of digitizing my first thesis of 2021: "Analysis of COVID-19 incidence data and visualization using the ”web-scraping” method"✍️
statistics bookdown data-analysis bachelor-thesis kalman-filter thesisdown covid-19 sars-cov-2 epiestim
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Mar 30, 2023 - HTML
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