Compute a phylogeny using EggNOG database
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Sep 4, 2019 - R
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eggnog
Here are 7 public repositories matching this topic...
💻 A unified bioinformatics tool for exploring evolutionarily conserved 🧬 proteins across model organisms. Combines multi-database ortholog search with Gene Ontology annotation extension. 🎓 PhD project, King's College London (2013-2019).
bioinformatics biogrid uniprot homologene geneontology orthomcl orthologs homology eggnog drosophila-melanogaster homo-sapiens kings-college-london danio-rerio caenorhabditis-elegans orthology-relationships inparanoid arabidopsis-thaliana saccharomyces-cerevisiae orthologous-genes schizosaccharomyces-pombe
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Mar 16, 2026 - PHP
Orthologs Databases — Archive of bioinformatics databases and PHP processing pipelines for cross-species ortholog analysis across 7 model organisms (2012-2016). Integrates data from 21 sources including HomoloGene, InParanoid, OrthoMCL, eggNOG, BioGRID, STRING, Gene Ontology, KEGG, and Reactome.
php string databases biogrid biomart homologene flybase geneontology orthomcl kegg-ortholog orthologs orthology homology eggnog mitocheck inparanoid eggnog-mapper pombase signalink
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Mar 15, 2026 - PHP
💻 Archive of my bioinformatics tool for exploring evolutionarily conserved 🧬 proteins across five model organisms using orthology databases (eggNOG, inParanoid, Homologene etc.). 🎓 Part of my PhD project, King's College London (2013-2019).
bioinformatics drosophila uniprot homologene kegg reactome orthomcl orthologs orthology homology eggnog drosophila-melanogaster homo-sapiens kings-college-london inparanoid arabidopsis-thaliana saccharomyces-cerevisiae orthologous-genes pombase schizosaccharomyces-pombe
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Mar 16, 2026 - Hack
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