dbgap

it's a cli debugger written in rust, it allows the placement of breakpoints, modifying elements at addresses, modifying the value of registers and other nice little things

Complex Phenotypes Team at the NCBI Hackathon

Use ChatGPT, Claude, or Codex to search public dbGaP, UK Biobank, and All of Us metadata through an open-source MCP.

Jupyter Notebooks to analyze the number of data access requests for dbGaP datasets and publication including RADx datasets.

Python package that creates a dbGaP submission from HuBMAP datasets

radx-destiller selects publications relevant to the NIH RADx-rad initiative using LLMs.

Links approved dbGaP access requests for NCI datasets (TCGA, CPTAC) to the papers that followed: who reuses NCI data, how fast, from which institution types. Proof of concept for the NCI ODS Data Sharing Impact Prize.

A utility class to retrieve information and download files from the dbGaP ftp server.