COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
Spatial bio-chemical reaction model editor and simulator
A Python toolbox for COPASI
Kinetic modeling of glucose and acetate metabolisms in E. coli
A Python Toolbox for COPASI
code and models to analyze COVID-19 data for Connecticut and other states
MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.
📈 Examination of the impact of COVID-19 spread by using a custom epidemiological model.
SpaceScanner: biological model optimization space scanner
Reproduce the figures derived from the ODE model described in "Inflammatory Bowel Disease: How Effective Is TNF-α Suppression?" article, published in PLoS One, in 2016, and submit the resulting curated and annotated model to the BioModels database, adhering to their stringent standards.
A more general, higher level, C++ API which can also be leveraged by other programming languages.
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
COPASI Implementation of a 6-compartment SEIARD model for the simulation of the COVID-19 pandemic.
A python package to integrate expression data into copasi models. It uses functionalities of python-copasi.
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