Rendering anatomical heatmaps with brainrender and matplotlib
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Nov 2, 2026 - Python
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brainglobe
Here are 6 public repositories matching this topic...
One-prompt 3D brain-region figures & rotating glow animations from 200+ BrainGlobe atlases (any species), rendered headless in Blender. A low-token Claude Code skill.
blender animation neuroscience data-visualization scientific-visualization 3d-visualization neuroanatomy claude brain-atlas brainglobe claude-code claude-skill
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Jun 24, 2026 - Python
Register histological brain sections to BrainGlobe atlases using vision-language and image-generation models.
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Nov 3, 2026 - Python
Animal-only macOS mouse-brain research planner with independent Allen CCF views, 3D probe visualization, bregma AP/ML/DV planning, and fail-closed data qualification.
python macos neuroscience scientific-visualization mouse-brain animal-research swiftui allen-ccf brainglobe
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Jul 26, 2026 - Python
Search and read public neuroscience data from your coding agent: DANDI, OpenNeuro, NeuroMorpho, Allen and BrainGlobe. Reads NWB files remotely, with a license and citation for every dataset. MCP server, CLI and skills.
nodejs cli mcp neuroscience open-data hdf5 electrophysiology nwb neuroinformatics bids allen-brain-atlas codex neuromorpho brainglobe openneuro model-context-protocol mcp-server agent-skills claude-code dandi
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Nov 3, 2026 - JavaScript
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