bbmap

Here are 5 public repositories matching this topic...

bbushnell / BBTools

BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.

Updated Sep 4, 2026
Java

Juke34 / AliNe

Star

Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease

Updated Jun 2, 2026
Nextflow

erikrikarddaniel / magmap

Star

Nextflow (nf-core) workflow for mapping reads to large collections of genomes.

nextflow metagenomics metatranscriptomics nf-core bbmap

Updated Jan 10, 2022
Nextflow

SherineAwad / BulkRNASeq

Star

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

rnaseq salmon edger snakemake-workflows tximport bbmap feature-counts

Updated Mar 31, 2022
R

MaxGreil / sradcqc

Star

Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow

docker bioinformatics quality-control pipeline nextflow fastq sra sra-toolkit bbmap

Updated Jan 17, 2022
Nextflow

Add this topic to your repo

To associate your repository with the bbmap topic, visit your repo's landing page and select "manage topics."

Learn more