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@sansomlab

sansomlab

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  1. cellhub cellhub Public

    Python pipelines for large-scale multimodal single-cell data analysis on HPC clusters

    Python 7 5

  2. gsfisher gsfisher Public

    R package for naive geneset over-enrichment testing.

    R 4

  3. cornet cornet Public

    Pipelines for correlation network analysis for gene expression data

    R 7 1

  4. tenx tenx Public

    Pipelines for the analysis of 10x single-cell RNA-sequencing data

    R 58 16

  5. txseq txseq Public

    Pipelines for computational analysis of transcriptome sequencing data

    Python 2 2

  6. HPCSetupGuide HPCSetupGuide Public

    Configuration and documentation for use of the University of Oxford's BMRC cluster

    Shell 1 1

Repositories

Showing 10 of 11 repositories
  • spatialhub Public

    pipelines for spatial transcriptomics analyses

    sansomlab/spatialhub's past year of commit activity
    Python 1 2 1 1 Updated Sep 23, 2026
  • cellhub Public

    Python pipelines for large-scale multimodal single-cell data analysis on HPC clusters

    sansomlab/cellhub's past year of commit activity
    Python 7 MIT 5 1 3 Updated Jul 23, 2026
  • txseq Public

    Pipelines for computational analysis of transcriptome sequencing data

    sansomlab/txseq's past year of commit activity
    Python 2 2 0 0 Updated Apr 28, 2026
  • HPCSetupGuide Public

    Configuration and documentation for use of the University of Oxford's BMRC cluster

    sansomlab/HPCSetupGuide's past year of commit activity
    Shell 1 1 0 0 Updated Oct 14, 2025
  • cornet Public

    Pipelines for correlation network analysis for gene expression data

    R 7 1 0 0 Updated Feb 19, 2025
  • scseq Public

    Pipelines for computational analysis of single-cell (and bulk) RNA-sequencing data

    sansomlab/scseq's past year of commit activity
    Jupyter Notebook 3 3 0 1 Updated Oct 10, 2023
  • tenx Public

    Pipelines for the analysis of 10x single-cell RNA-sequencing data

    sansomlab/tenx's past year of commit activity
    R 58 MIT 16 2 4 Updated Jul 12, 2023
  • CrossJCIInsight2022 Public

    Scripts accompanying Cross et al. JCI Insight 2022

    sansomlab/CrossJCIInsight2022's past year of commit activity
    0 MIT 0 0 0 Updated Jan 12, 2023
  • gsfisher Public

    R package for naive geneset over-enrichment testing.

    sansomlab/gsfisher's past year of commit activity
    R 4 MIT 0 0 0 Updated Jul 3, 2022
  • arco Public

    automatic report compiler

    sansomlab/arco's past year of commit activity
    CSS 0 0 0 0 Updated Jun 4, 2020

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