Pathogen Informatics, Wellcome Sanger Institute
- 160 followers
- Hinxton, Cambs., UK
- http://www.sanger.ac.uk/science/groups/pathogen-informatics
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Repositories
- gps-pipeline-sanger Public Forked from GlobalPneumoSeq/gps-pipeline
Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)
- assorted-sub-workflows Public
- mags_maker Public
Generate Metagenome-Assembled Genomes (MAGs) from short-read metagenomic sequencing data. A re-implementation of generate_mags.
- trepogeno Public
trepogeno is a molecular typing scheme and tool for classifying Treponema pallidum genomic data
- strain_mapper Public
- gemsweep Public
Nextflow pipeline for deconvoluting mixed sample reads into bins with strain-level resolution.
- LSMD Public
- qc-short-read Public
QC-short-read is a Nextflow DSL2 pipeline for quality control and taxonomic profiling of short-read Illumina sequencing data. It accepts data from multiple input sources and produces per-sample FastQC reports, Kraken2/Bracken taxonomic profiles, and an aggregated MultiQC summary.
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