Skip to content
This repository was archived by the owner on Sep 25, 2018. It is now read-only.
This repository was archived by the owner on Sep 25, 2018. It is now read-only.

Add parser/writer for GAF #14

Description

@cmungall

Many groups use GAFs for phenotypes as well as GO - e.g. planteome (cc @jhpoelen)

Conversely, pxf is generic enough for GO annotations (which are essentially normal, evolved phenotypes for genes)

It would be useful to read/write from GAFs into the phenopacket datamodel.

There are also a family of similar formats which could follow the same pattern. E.g. PAFs:
phenopackets/phenopacket-format#67

And of course the HPOA (non-phenote) TSVs

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions