Repositories list

• tnbc-chemo

  Public

  navinlabcode/tnbc-chemo’s past year of commit activity
  Ecotypes of Triple-Negative Breast Cancer in Response to Chemotherapy

  chemotherapybreast-cancerscrna+ 4

  chemotherapybreast-cancerscrnavisiumtnbcxeniumvisium-hd

  R

  •44 forks in navinlabcode/tnbc-chemo•1818 stars in navinlabcode/tnbc-chemo•00 issues in navinlabcode/tnbc-chemo•00 pull requests in navinlabcode/tnbc-chemo•Updated Oct 12, 2026Oct 12, 2026

• Copykat_python

  Public

  navinlabcode/Copykat_python’s past year of commit activity
  The Copykat re-write in Python

  Python

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  MIT License

  •11 fork in navinlabcode/Copykat_python•1111 stars in navinlabcode/Copykat_python•22 issues in navinlabcode/Copykat_python•77 pull requests in navinlabcode/Copykat_python•Updated Sep 15, 2026Sep 15, 2026

• DICE-seq

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  navinlabcode/DICE-seq’s past year of commit activity
  R

  •00 forks in navinlabcode/DICE-seq•00 stars in navinlabcode/DICE-seq•00 issues in navinlabcode/DICE-seq•00 pull requests in navinlabcode/DICE-seq•Updated Aug 29, 2026Aug 29, 2026

• CellTrek

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  navinlabcode/CellTrek’s past year of commit activity
  R

  •2323 forks in navinlabcode/CellTrek•136136 stars in navinlabcode/CellTrek•2828 issues in navinlabcode/CellTrek•22 pull requests in navinlabcode/CellTrek•Updated Aug 23, 2026Aug 23, 2026

• navinlabcode.github.io

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  navinlabcode/navinlabcode.github.io’s past year of commit activity
  HTML

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  Apache License 2.0

  •00 forks in navinlabcode/navinlabcode.github.io•00 stars in navinlabcode/navinlabcode.github.io•00 issues in navinlabcode/navinlabcode.github.io•00 pull requests in navinlabcode/navinlabcode.github.io•Updated Aug 19, 2026Aug 19, 2026

• DCIS_TME

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  navinlabcode/DCIS_TME’s past year of commit activity
  R

  •00 forks in navinlabcode/DCIS_TME•00 stars in navinlabcode/DCIS_TME•00 issues in navinlabcode/DCIS_TME•00 pull requests in navinlabcode/DCIS_TME•Updated Aug 17, 2026Aug 17, 2026

• CSHL_workshops

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  navinlabcode/CSHL_workshops’s past year of commit activity
  R

  •55 forks in navinlabcode/CSHL_workshops•1313 stars in navinlabcode/CSHL_workshops•00 issues in navinlabcode/CSHL_workshops•00 pull requests in navinlabcode/CSHL_workshops•Updated Jul 26, 2026Jul 26, 2026

• copykat

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  navinlabcode/copykat’s past year of commit activity
  R

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  Other

  •6666 forks in navinlabcode/copykat•312312 stars in navinlabcode/copykat•7171 issues in navinlabcode/copykat•22 pull requests in navinlabcode/copykat•Updated Jun 16, 2026Jun 16, 2026

• pan_cancer_paper

  Public

  navinlabcode/pan_cancer_paper’s past year of commit activity
  Pan-cancer CNA paper

  R

  •00 forks in navinlabcode/pan_cancer_paper•22 stars in navinlabcode/pan_cancer_paper•00 issues in navinlabcode/pan_cancer_paper•00 pull requests in navinlabcode/pan_cancer_paper•Updated May 12, 2026May 12, 2026

• Copykit_manuscript_code

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  navinlabcode/Copykit_manuscript_code’s past year of commit activity
  R

  •00 forks in navinlabcode/Copykit_manuscript_code•11 star in navinlabcode/Copykit_manuscript_code•00 issues in navinlabcode/Copykit_manuscript_code•00 pull requests in navinlabcode/Copykit_manuscript_code•Updated Feb 3, 2026Feb 3, 2026

• CopyKit_paper

  Public

  navinlabcode/CopyKit_paper’s past year of commit activity
  Scripts to reproduce the figures from the CopyKit manuscript

  HTML

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  MIT License

  •00 forks in navinlabcode/CopyKit_paper•00 stars in navinlabcode/CopyKit_paper•00 issues in navinlabcode/CopyKit_paper•00 pull requests in navinlabcode/CopyKit_paper•Updated Jan 9, 2026Jan 9, 2026

• wellDA-seq

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  navinlabcode/wellDA-seq’s past year of commit activity
  Single cell genome and epigenome co-profiling reveals hardwiring and plasticity in breast cancer

  R

  •00 forks in navinlabcode/wellDA-seq•11 star in navinlabcode/wellDA-seq•00 issues in navinlabcode/wellDA-seq•00 pull requests in navinlabcode/wellDA-seq•Updated Dec 30, 2025Dec 30, 2025

• copykit

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  navinlabcode/copykit’s past year of commit activity
  Toolkit for single-cell copy number analysis

  R

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  Other

  •77 forks in navinlabcode/copykit•3636 stars in navinlabcode/copykit•44 issues in navinlabcode/copykit•00 pull requests in navinlabcode/copykit•Updated Dec 15, 2025Dec 15, 2025

• wellDR-seq

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  navinlabcode/wellDR-seq’s past year of commit activity
  Code deposit for wellDR-seq paper

  R

  •22 forks in navinlabcode/wellDR-seq•66 stars in navinlabcode/wellDR-seq•11 issue in navinlabcode/wellDR-seq•00 pull requests in navinlabcode/wellDR-seq•Updated Sep 14, 2025Sep 14, 2025

• B7-H3

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  navinlabcode/B7-H3’s past year of commit activity
  R

  •00 forks in navinlabcode/B7-H3•00 stars in navinlabcode/B7-H3•00 issues in navinlabcode/B7-H3•00 pull requests in navinlabcode/B7-H3•Updated Sep 9, 2025Sep 9, 2025

• intro_bioinfo_course

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  navinlabcode/intro_bioinfo_course’s past year of commit activity
  introduction to bioinformatics workshop

  HTML

  •00 forks in navinlabcode/intro_bioinfo_course•00 stars in navinlabcode/intro_bioinfo_course•00 issues in navinlabcode/intro_bioinfo_course•00 pull requests in navinlabcode/intro_bioinfo_course•Updated Apr 14, 2025Apr 14, 2025

• PRECISE_paper

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  navinlabcode/PRECISE_paper’s past year of commit activity
  code for generating the figures for the PRECISE trial paper

  R

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  MIT License

  •00 forks in navinlabcode/PRECISE_paper•11 star in navinlabcode/PRECISE_paper•00 issues in navinlabcode/PRECISE_paper•00 pull requests in navinlabcode/PRECISE_paper•Updated Apr 8, 2025Apr 8, 2025

• normalbreastDNA

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  navinlabcode/normalbreastDNA’s past year of commit activity
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  •11 fork in navinlabcode/normalbreastDNA•44 stars in navinlabcode/normalbreastDNA•11 issue in navinlabcode/normalbreastDNA•00 pull requests in navinlabcode/normalbreastDNA•Updated Feb 17, 2025Feb 17, 2025

• GCC_python_workshop

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  navinlabcode/GCC_python_workshop’s past year of commit activity
  Repository for introduction to RNA seq analysis in python. Workshop hosted by the GCC and led by Reem Elgaish and Ryan Mulqueen.

  Jupyter Notebook

  •11 fork in navinlabcode/GCC_python_workshop•11 star in navinlabcode/GCC_python_workshop•00 issues in navinlabcode/GCC_python_workshop•11 pull request in navinlabcode/GCC_python_workshop•Updated Feb 10, 2025Feb 10, 2025

• vignettes

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  navinlabcode/vignettes’s past year of commit activity
  55 forks in navinlabcode/vignettes•00 stars in navinlabcode/vignettes•00 issues in navinlabcode/vignettes•00 pull requests in navinlabcode/vignettes•Updated Jul 2, 2024Jul 2, 2024

• Arc-well

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  navinlabcode/Arc-well’s past year of commit activity
  Scripts for the Arc-well paper

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  •11 fork in navinlabcode/Arc-well•44 stars in navinlabcode/Arc-well•00 issues in navinlabcode/Arc-well•00 pull requests in navinlabcode/Arc-well•Updated Dec 8, 2023Dec 8, 2023

• HumanBreastCellAtlas.github.io

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  navinlabcode/HumanBreastCellAtlas.github.io’s past year of commit activity
  The Human Breast Cell Atlas results.

  00 forks in navinlabcode/HumanBreastCellAtlas.github.io•00 stars in navinlabcode/HumanBreastCellAtlas.github.io•66 issues in navinlabcode/HumanBreastCellAtlas.github.io•00 pull requests in navinlabcode/HumanBreastCellAtlas.github.io•Updated Jun 6, 2023Jun 6, 2023

• MissionBio_TNBC_paper

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  navinlabcode/MissionBio_TNBC_paper’s past year of commit activity
  Code for the Mission Bio TNBC paper

  R

  •00 forks in navinlabcode/MissionBio_TNBC_paper•00 stars in navinlabcode/MissionBio_TNBC_paper•00 issues in navinlabcode/MissionBio_TNBC_paper•00 pull requests in navinlabcode/MissionBio_TNBC_paper•Updated Jun 2, 2023Jun 2, 2023

• HumanBreastCellAtlas

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  navinlabcode/HumanBreastCellAtlas’s past year of commit activity
  Repository for codes for the HBCA paper

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  •1111 forks in navinlabcode/HumanBreastCellAtlas•4444 stars in navinlabcode/HumanBreastCellAtlas•00 issues in navinlabcode/HumanBreastCellAtlas•00 pull requests in navinlabcode/HumanBreastCellAtlas•Updated Mar 17, 2023Mar 17, 2023

• CopyKit-UserGuide

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  navinlabcode/CopyKit-UserGuide’s past year of commit activity
  This is the User Guide for the CopyKit R Package

  TeX

  •00 forks in navinlabcode/CopyKit-UserGuide•22 stars in navinlabcode/CopyKit-UserGuide•00 issues in navinlabcode/CopyKit-UserGuide•00 pull requests in navinlabcode/CopyKit-UserGuide•Updated Feb 8, 2023Feb 8, 2023

• snubar_atac_scripts

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  navinlabcode/snubar_atac_scripts’s past year of commit activity
  Scripts (demultiplexing) used in the SNuBar-ATAC manuscript

  Shell

  •00 forks in navinlabcode/snubar_atac_scripts•22 stars in navinlabcode/snubar_atac_scripts•11 issue in navinlabcode/snubar_atac_scripts•00 pull requests in navinlabcode/snubar_atac_scripts•Updated Nov 17, 2022Nov 17, 2022

• CNV_pipeline

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  navinlabcode/CNV_pipeline’s past year of commit activity
  R

  •22 forks in navinlabcode/CNV_pipeline•33 stars in navinlabcode/CNV_pipeline•00 issues in navinlabcode/CNV_pipeline•00 pull requests in navinlabcode/CNV_pipeline•Updated Oct 6, 2022Oct 6, 2022

• scquantum

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  navinlabcode/scquantum’s past year of commit activity
  R

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  GNU General Public License v2.0

  •00 forks in navinlabcode/scquantum•11 star in navinlabcode/scquantum•00 issues in navinlabcode/scquantum•00 pull requests in navinlabcode/scquantum•Updated Apr 1, 2022Apr 1, 2022

• PRECISION_clonality_sc

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  navinlabcode/PRECISION_clonality_sc’s past year of commit activity
  Scripts to generate plots used for scDNA precision clonality sample

  R

  •11 fork in navinlabcode/PRECISION_clonality_sc•00 stars in navinlabcode/PRECISION_clonality_sc•00 issues in navinlabcode/PRECISION_clonality_sc•00 pull requests in navinlabcode/PRECISION_clonality_sc•Updated Jan 23, 2022Jan 23, 2022

• RcppML

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  navinlabcode/RcppML’s past year of commit activity
  Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more

  C++

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  GNU General Public License v2.0

  •2121 forks in navinlabcode/RcppML•00 stars in navinlabcode/RcppML•00 issues in navinlabcode/RcppML•00 pull requests in navinlabcode/RcppML•Updated Dec 1, 2021Dec 1, 2021