Skip to content

@ProteinDesignLab Protein Design Lab

All

    Repositories list

    15 repositories

    • protpardelle-1c

      Public
      Updated Protpardelle models with more robust motif scaffolding and multichain support
      Python
      •
      MIT License
      •15•88•2•0•Updated Oct 2, 2026Oct 2, 2026

    • dEVA

      Public
      design by evolutionary algorithm
      Python
      •
      MIT License
      •3•6•0•0•Updated Aug 23, 2026Aug 23, 2026

    • caliby

      Public
      Potts model-based protein sequence design
      Python
      •
      Apache License 2.0
      •17•117•0•0•Updated Jul 1, 2026Jul 1, 2026

    • SLAE

      Public
      Python
      •
      Apache License 2.0
      •0•14•1•0•Updated Jun 29, 2026Jun 29, 2026

    • 3DRNA

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 11, 2026Jun 11, 2026

    • protpardelle

      Public
      Diffusion-based all-atom protein generative model.
      Python
      •
      MIT License
      •22•239•4•0•Updated Aug 27, 2025Aug 27, 2025

    • protein_shapes

      Public
      Metrics to evaluate distributional coverage of generative models of protein structures.
      Python
      •
      MIT License
      •4•21•1•1•Updated Aug 13, 2025Aug 13, 2025

    • protein_seq_des

      Public
      Code for our paper "Protein sequence design with a learned potential"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •24•81•0•0•Updated Sep 8, 2023Sep 8, 2023

    • protein-design-tutorials

      Public
      Tutorials, cheat sheets, and other resources for computational methods for protein design.
      Jupyter Notebook
      •29•137•0•0•Updated Aug 15, 2023Aug 15, 2023

    • IgVAE

      Public
      A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•32•0•0•Updated Jul 25, 2022Jul 25, 2022

    • IgFold

      Public
      Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
      Python
      •
      Other
      •73•0•0•0•Updated May 4, 2022May 4, 2022

    • ColabFold

      Public
      Making Protein folding accessible to all via Google Colab!
      Jupyter Notebook
      •
      MIT License
      •752•0•0•0•Updated Aug 7, 2021Aug 7, 2021

    • visualize_violations

      Public
      Script for visualizing wrong/violated predictions in PyMol
      Python
      •1•3•0•0•Updated Jun 14, 2020Jun 14, 2020

    • pdb-tools

      Public
      Set of utility scripts to manipulate PDB files
      Python
      •
      Other
      •122•4•0•0•Updated Feb 19, 2018Feb 19, 2018

    • BetaBarrelBuilder

      Public
      GUI for building beta barrels and exporting the resulting PDB
      Java
      •1•1•0•0•Updated Dec 28, 2017Dec 28, 2017
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.