Annotate VCF file with dosages estimated from genotype likelihoods
To compile add_dosage just type make all
The add_dosage program assumes a properly formated gzipped vcf file. It only computes dosages
for SNPs and disregards other calls. To compute dosages (DS) it converts phred-scaled likelihoods
(PL), which are assumed to be the final entry for each sample's formatted call.
add_dosage [OPTIONS] INPUT.VCF.GZ OUTPUT.VCF.GZ
Right now OPTIONS are disabled.