Issues

• Switch to PPX data

  enhancement
  nextstrain/dengue#127 · Filter by author joverlee521 opened on May 7, 2026

• Consider adding NS1 gene [non-urgent]

  enhancement
  nextstrain/dengue#124 · Filter by author j23414 opened on Mar 4, 2026

• Include data from GISAID

  enhancement
  nextstrain/dengue#120 · Filter by author Rohit-Satyam opened on Nov 6, 2025
  1

• phylogenetic: Refactor workflow to start from all data

  nextstrain/dengue#119 · Filter by author joverlee521 opened on Oct 2, 2025

• Update minor lineage colors

  enhancement
  nextstrain/dengue#113 · Filter by author j23414 opened on Aug 15, 2025

• ingest: replace calculate_gene_coverage steps with Nextclade output

  nextstrain/dengue#111 · Filter by author joverlee521 opened on Jul 11, 2025
  2

• Speedup phylogenetic GH Actions: Split out GitHub action by serotype

  enhancement
  nextstrain/dengue#107 · Filter by author j23414 opened on May 19, 2025

• Revisit: Setting the reference and root in dengue

  enhancement
  nextstrain/dengue#103 · Filter by author j23414 opened on Mar 20, 2025
  2

• Fixup: View in other platforms -> Nextclade -> Run -> Error: null pointer passed to rust

  bug
  nextstrain/dengue#97 · Filter by author j23414 opened on Mar 3, 2025
  9

• Enhancement: Consider a custom color palette for lineages, especially for minor lineages

  enhancement
  nextstrain/dengue#96 · Filter by author j23414 opened on Feb 27, 2025

• Enhancement: Consider rooting on an outgroup

  enhancement
  nextstrain/dengue#95 · Filter by author j23414 opened on Feb 27, 2025

• Possibility to get the GFF file

  enhancement
  nextstrain/dengue#87 · Filter by author Rohit-Satyam opened on Dec 11, 2024
  1

• Properly handle CSV-like TSVs

  nextstrain/dengue#86 · Filter by author joverlee521 opened on Dec 6, 2024

• Restructure S3 URLs

  nextstrain/dengue#72 · Filter by author joverlee521 opened on Jun 29, 2024

• ENH: nextclade extensions to display multiple nomenclatures

  enhancement
  nextstrain/dengue#59 · Filter by author j23414 opened on May 31, 2024
  3

• Switch DENV2 genotypes to numeric to be consistent with DENV1, 3, and 4

  enhancementhelp wanted
  nextstrain/dengue#32 · Filter by author j23414 opened on Mar 14, 2024
  3

• Establish some deduplication guidelines within the phylogenetic workflow

  enhancement
  nextstrain/dengue#30 · Filter by author j23414 opened on Feb 21, 2024
  1

• ENH: Generalize taxon id to serotype map definitions to a configuration file

  enhancement
  nextstrain/dengue#27 · Filter by author j23414 opened on Feb 12, 2024