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Pull requests: loculus-project/loculus

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Pull requests list

feat(docs): Add Sneha to Loculus Docs
#7244 opened Sep 5, 2026 by snehasaisneha Member Loading…
3
feat(backend): human-readable file ids backend related to the loculus backend component update_db_schema website Tasks related to the web application
#7242 opened Sep 4, 2026 by maverbiest Contributor • Draft
2 of 3 tasks
1
6
refactor(deposition): replace add_to_*_table functions with one add_to_db function - this is useful as we will soon have more tables deposition related to ENA/INSDC deposition
#7241 opened Sep 3, 2026 by anna-parker Contributor Loading…
2 of 3 tasks
6
feat(deposition): add a test that asserts insdcRawReadsAccession is passed as run_ref in assembly manifest.tsv if supplied in metadata deposition related to ENA/INSDC deposition
#7240 opened Sep 3, 2026 by anna-parker Contributor Loading…
1 of 3 tasks
4
feat(deployment): make backend jvm options configurable deployment Code changes targetting the deployment infrastructure
#7239 opened Sep 3, 2026 by clonder Contributor • Draft
2 tasks done
7
feat(deposition): make loculus metadata field names configurable and ENA db parameters Final deposition related to ENA/INSDC deposition
#7221 opened Sep 2, 2026 by anna-parker Contributor Loading…
2 of 3 tasks
14
fix(deployment): retry transient errors when downloading config URLs deployment Code changes targetting the deployment infrastructure
#7219 opened Sep 2, 2026 by corneliusroemer Contributor • Draft
2
feat(website): Mirror backend filename validation in website deployment Code changes targetting the deployment infrastructure website Tasks related to the web application
#7218 opened Sep 2, 2026 by tombch Collaborator Loading…
2 of 3 tasks
1
23
feat(ena-deposition): split up ENA integration tests into liveness and submission tests, create a helpers file deposition related to ENA/INSDC deposition
#7217 opened Sep 2, 2026 by anna-parker Contributor Loading…
3 tasks
17
chore(deps): bump the minorandpatch group across 1 directory with 9 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#7214 opened Sep 1, 2026 by dependabot Bot Loading…
chore(deps): bump pandas from 2.3.3 to 3.0.5 in /ingest conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#7212 opened Sep 1, 2026 by dependabot Bot Loading…
1
fix(deployment): Add retry logic for config processor deployment Code changes targetting the deployment infrastructure
#7208 opened Sep 1, 2026 by tombch Collaborator Loading…
3 tasks
5
chore(kubernetes): update SILO 0.11.0 -> 0.13.3, LAPIS 0.8.0 -> 0.8.6 deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd
#7207 opened Sep 1, 2026 by fengelniederhammer Contributor Loading…
2 tasks done
1
5
feat(action): added chikV taxon id
#7204 opened Aug 30, 2026 by arthurshem86 Contributor Loading…
2 of 3 tasks
3
feat(raw-reads-processing): use the deacon Python bindings instead of the CLI server preview Triggers a deployment to argocd
#7202 opened Aug 28, 2026 by corneliusroemer-agent Collaborator • Draft
1
fix(e2e): one helper for the reload-until-appears waits, and don't let a transient reload error abort them
#7201 opened Aug 28, 2026 by corneliusroemer-agent Collaborator Loading…
9
fix(website): error when a metadata file is dropped into the sequence field preview Triggers a deployment to argocd website Tasks related to the web application
#7200 opened Aug 28, 2026 by corneliusroemer-agent Collaborator Loading…
1
7
fix(e2e): Eliminate race condition by asserting row-count=1, refactor shared logic tests Test related issues
#7198 opened Aug 28, 2026 by corneliusroemer Contributor Loading…
8
fix(ci): make the Flyway migration check actually check something
#7194 opened Aug 27, 2026 by corneliusroemer-agent Collaborator • Draft
fix(ingest): put the metadata header in every submission batch deployment Code changes targetting the deployment infrastructure ingest Ingest pipeline
#7193 opened Aug 27, 2026 by corneliusroemer-agent Collaborator Loading…
6
feat(preprocessing): process a batch's raw read files concurrently deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd
#7190 opened Aug 26, 2026 by corneliusroemer-agent Collaborator • Draft
1
feat(raw-reads-processing): validate against a warm readtools JVM preview Triggers a deployment to argocd
#7188 opened Aug 26, 2026 by corneliusroemer-agent Collaborator • Draft
1
fix(ingest): report every failed submit batch, not just the last ingest Ingest pipeline
#7184 opened Aug 26, 2026 by corneliusroemer-agent Collaborator • Draft
feat!(website): also pass header in inputFields to ensure additional,… deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#7166 opened Aug 26, 2026 by anna-parker Contributor Loading…
1 of 3 tasks
4
fix(backend): stop the update-tracker triggers going quadratic on bulk inserts backend related to the loculus backend component update_db_schema
#7165 opened Aug 25, 2026 by corneliusroemer-agent Collaborator • Draft
1
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