GitHub - hurwitzlab/metag_topic_modeling: topic modeling approaches for metagenomics

This project is developed by Simon Rubin-Toles in Collaboration with Drs. Hurwitz and Ponsero.

Name		Name	Last commit message	Last commit date
Plots		Plots
R_preprocessing		R_preprocessing
results		results
results2		results2
results3		results3
.RData		.RData
.RDataTmp		.RDataTmp
.RDataTmp1		.RDataTmp1
.RDataTmp2		.RDataTmp2
.Rhistory		.Rhistory
.gitignore		.gitignore
Gensim_tinkering.ipynb		Gensim_tinkering.ipynb
Gensim_with_our_data.ipynb		Gensim_with_our_data.ipynb
Learning_scikit.ipynb		Learning_scikit.ipynb
Log10_comp_plot_.svg		Log10_comp_plot_.svg
MatrixPreprocessor.R		MatrixPreprocessor.R
Our_data.ipynb		Our_data.ipynb
README.md		README.md
Random_Text_Sample.ipynb		Random_Text_Sample.ipynb
Scikit_LDA.ipynb		Scikit_LDA.ipynb
TSS_comp_plot_.svg		TSS_comp_plot_.svg
all_taxonomy_levels.ipynb		all_taxonomy_levels.ipynb
analystpreprocess.ipynb		analystpreprocess.ipynb
body_site_plot.svg		body_site_plot.svg
final_copy.ipynb		final_copy.ipynb
gapminder-life-expectancy.csv		gapminder-life-expectancy.csv
gensim_LDA.ipynb		gensim_LDA.ipynb
gut_level.ipynb		gut_level.ipynb
metag_topic_modeling.Rproj		metag_topic_modeling.Rproj
mouth.ipynb		mouth.ipynb
options_matrix.ipynb		options_matrix.ipynb
oral_and_gut.ipynb		oral_and_gut.ipynb
preprocessed_sets.ipynb		preprocessed_sets.ipynb
test		test

Navigation Menu