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Achievement: Pair Extraordinairex4Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex4Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

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@nf-core @ncbench

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famosab/README.md

Hi, my name is Famke and I am a Bioinformatian working at the Quantitative Biology Center (QBiC) at the University of Tuebingen.

I mainly focus on cancer genomics, variant calling and variant interpretation. You can find the relevant repositories pinned :)

I used to spend a lot of time with science-communication: Check out the Faktor14 magazine and the StudSciCom initiative.

You can find more information about me on my LinkedIn profile.

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  1. snakemake-workflows/dna-seq-benchmark snakemake-workflows/dna-seq-benchmark Public

    A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets

    Python 13 3

  2. nf-core/sarek nf-core/sarek Public

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Nextflow 614 562

  3. nf-core/variantprioritization nf-core/variantprioritization Public

    Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for precision cancer medicine using Personal Cancer Genome Reporter…

    Nextflow 16 11

  4. qbic-pipelines/vcftocounts qbic-pipelines/vcftocounts Public

    Nextflow pipeline to transform (g)VCF files to matrices for statistical analysis.

    Nextflow 2 3

  5. nf-core/bamtofastq nf-core/bamtofastq Public

    Converts bam or cram files to fastq format and does quality control.

    Nextflow 32 18

  6. iliasqc iliasqc Public

    Python package to convert txt files into zip folder that can be uploaded to Ilias to create question pools.

    Python