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kmer-optimization

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Notebooks and scripts for building a generative model to describe expected unitigs for a given sequencing read set

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Name		Name	Last commit message	Last commit date
.ipynb_checkpoints		.ipynb_checkpoints
Data		Data
notebooks		notebooks
sample_ntcard		sample_ntcard
scripts/summary_scripts		scripts/summary_scripts
README.md		README.md
genome_model.py		genome_model.py
kmer_analysis.py		kmer_analysis.py
merge_ntcard.py		merge_ntcard.py
simulate_reads.py		simulate_reads.py

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Optimizing k for De Bruijn graph assembly

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https://goo.gl/Qaed8m

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Notebooks and scripts for building a generative model to describe expected unitigs for a given sequencing read set

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