API Reference (Algorithm Module)

List of structures

• cutoff_info_t

List of functions

Functions for optimization

• double pllmod_algo_opt_frequencies
• double pllmod_algo_opt_subst_rates
• double pllmod_algo_opt_alpha
• double pllmod_algo_opt_pinv
• double pllmod_algo_opt_alpha_pinv
• double pllmod_algo_opt_rates_weights
• double pllmod_algo_opt_brlen_scaler

Functions for topological search

• double pllmod_algo_spr_round(#algo_opt_spr_round)

Structure descriptions

index

Function descriptions

index