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CenGEN

The Complete Gene Expression Map of the C. elegans Nervous System

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  1. CengenApp CengenApp Public

    CSS 4 1

  2. Thresholding_sc Thresholding_sc Public

    Selecting a threshold for calling gene expression in single-cell data

    R 1

  3. novel_junctions novel_junctions Public

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  4. connectivity_analysis connectivity_analysis Public

    Hypothesis testing the genetic basis of the connectome

    MATLAB

  5. Initial_single_cell_analysis Initial_single_cell_analysis Public

    Cell calling and background correction on individual single-cell experiments

    R

  6. splicing splicing Public

    Splicing analysis with SplAdder

    R

Repositories

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  • cengenAnnotate Public

    Automated CeNGEN-based annotation of Seurat clusters for C. elegans scRNA-seq

    cengenproject/cengenAnnotate's past year of commit activity
    R 0 0 0 0 Updated Aug 27, 2026
  • cengen-reference-data Public

    Pins board hosting versioned CeNGEN reference expression datasets (stage/sex variants), consumed by cengenAnnotate and other tools

    cengenproject/cengen-reference-data's past year of commit activity
    0 0 0 0 Updated Aug 26, 2026
  • L1_dataset_analysis Public

    Sample scripts for analyses of single-cell RNA Seq data from the L1 C. elegans nervous system

    cengenproject/L1_dataset_analysis's past year of commit activity
    R 0 0 0 0 Updated Jun 10, 2026
  • CengenApp Public
    cengenproject/CengenApp's past year of commit activity
    CSS 4 1 2 0 Updated Jan 10, 2026
  • CeNGEN_integrated_analysis_2024 Public

    Github repo for the 2024 CeNGEN manuscript detailing our work analyzing gene expression data from FACS sorted C. elegans neurons, integrating data from both bulk and single cell RNA-seq methods

    cengenproject/CeNGEN_integrated_analysis_2024's past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 14, 2025
  • regression_exon_skipping Public
    cengenproject/regression_exon_skipping's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Feb 13, 2025
  • suppa_events Public
    cengenproject/suppa_events's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Feb 6, 2025
  • stringtie_quantif Public
    cengenproject/stringtie_quantif's past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Jan 23, 2025
  • quantif_exon_skipping Public
    cengenproject/quantif_exon_skipping's past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Nov 7, 2024
  • reanalysis_tissue Public
    cengenproject/reanalysis_tissue's past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Nov 7, 2024
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