Bioinformatics Engineer based in Mississauga, Ontario. I build production genomics pipelines, and I teach bioinformatics through dracoreach.com.
- Pipeline engineering: production Nextflow pipelines for viral genomics, from raw reads to annotated genomes and phylogenies
- ML for genomics: deep learning models for pathogen classification
- Teaching: 1:1 bioinformatics coaching, from Bash basics to production Nextflow
- sequenoscope — tools for Oxford Nanopore sequencing analysis, comparing sequencing outcomes across experimental conditions (Python)
- nf-FluForge — automated influenza genome annotation, segment classification, pseudogenome assembly, and phylogenetic tree construction (Nextflow, VADR, TABLE2ASN)
- nf-mutscan — mutation scanning for influenza genomic data (Nextflow)
- SmartAD — deep learning toolkit for influenza analysis with a GUI (Python, PyTorch)
Nextflow · Python · R · Docker · SLURM/HPC · scRNA-seq (Seurat, Scanpy)
- LinkedIn — bioinformatics careers and technical explainers
- dracoreach.com — bioinformatics coaching