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  • nankai university
  • TianJin,China

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XTSgreen/README.md

XTSgreen · 小天使格礼

Nankai University · Tianjin, China

计算生物学 / 医学 / 深度学习 / 数学
Computational biology / medicine / deep learning / mathematics

关于我 / About me

南开大学在读，兴趣横跨计算生物学、医学、深度学习与数学，聚焦单细胞时序分析与逆最优传输方法学。 At Nankai University, working across computational biology, medicine, deep learning and mathematics, with a focus on single-cell trajectory analysis and inverse optimal transport methodology.

我相信好工具是被复用的科学。 I believe good tools are reusable science.

目标是构建一个计算机 / 深度学习从零开始的百科全书，回馈社区。 The goal is to build a from-zero encyclopedia of computer science and deep learning, giving back to the community.

代表项目 / Featured projects

bioIOT · R + Python 双语言发布 半松弛逆最优传输求解器：Anderson 加速不动点 + 精确隐式微分梯度、两阶段去偏拟合、随机游走 pseudotime；已上架 PyPI，CRAN 审核中。 Semi-relaxed IOT solver with Anderson-accelerated fixed points, exact implicit gradients, two-stage debiased fitting and random-walk pseudotime; on PyPI, under CRAN review.

medical_student_rescue_plan · Vue 医学生与计算机初学者的转型路线指南。 A transition roadmap for medical students and CS beginners.

evolution-grammar-live-track · Python SARS-CoV-2 RBD 突变前瞻预测的时间戳注册库。 A timestamp registry of prospective SARS-CoV-2 RBD mutation predictions.

技术栈 / Toolbox

一、平台工程 / Platform Engineering

后端 / Backend

NestJS TypeORM PostgreSQL OpenSearch Redis MinIO

Python 服务 / Services

FastAPI Celery SQLAlchemy pydantic uv

前端 / Frontend

Vue 3 Vite Pinia Element Plus ECharts

AI 集成 / AI integration

Evidence-first RAG Function-calling Agent bge-reranker GROBID

基建 / DevOps

Docker GitHub Actions pnpm Node.js Playwright

二、科研算法 / Research Algorithm

AI/ML

PyTorch nnU-Net v2 ESM-2 ESMFold ProteinMPNN RFdiffusion scikit-learn

生信 / Bioinformatics

Scanpy anndata CellTypist PyDESeq2 gseapy WGCNA R

统计 / Stats

Profile details Stats Repos per language

Streak stats

联系 / Contact

bioIOT 相关问题请优先提 Issue For bioIOT questions please open an issue first

Popular repositories Loading

  1. medical_student_rescue_plan medical_student_rescue_plan Public

    在医疗道路越来越难走的当下，希望这个项目能帮助一部分医学生/计算机初学者找到出路，qq群号965751576，知识面涵盖互联网开发、原生开发、深度学习、机器学习、硬件开发等的基础知识，起到帮助入门的作用

    Vue 258 13

  2. bioIOT-R bioIOT-R Public

    Inverse optimal transport for single-cell trajectory analysis in R: Anderson-accelerated soft Sinkhorn with exact implicit gradients, two-stage debiased fitting, transition matrices, random-walk ps…

    R 2

  3. evolution-grammar-live-track evolution-grammar-live-track Public

    Frozen prospective predictions of SARS-CoV-2 RBD mutations (data cutoff 2026-08-01; reconciliation 2027-03). Results-only timestamp registry, no code.

    Python

  4. bioIOT-py bioIOT-py Public

    Plug-and-play semi-relaxed inverse optimal transport (IOT) in Python: Anderson-accelerated soft Sinkhorn with exact implicit gradients, sklearn-style fitting, transition matrices, random-walk pseud…

    Python

  5. XTSgreen XTSgreen Public

    GitHub profile · 计算生物学 / optimal transport / single-cell genomics

  6. IOT-single-cell-paper IOT-single-cell-paper Public

    Python