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MSstatsTMT
MSstatsTMT PublicR-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
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MSstatsPTM
MSstatsPTM PublicPost Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments
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Repositories
- MSstatsResponse Public
- MSstatsBioNet Public
- MSstatsTMT Public
R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
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- MSstatsConvertLLM Public
In development package to replace the converters in MSstatsConvert with (local) LLMs. This work was present at ASMS 2026.
- MSstatsBig Public
MSstats functionality to handle large DIA datasets. Replaces standard MSstats converters with MSstatsBig converters.
- Workflow-CaseStudies-Statistical-Analysis-Differential-Abundance-MSI Public
Workflow and case studies for Statistical Principles Define an Open-Source Differential Analysis Workflow for Mass Spectrometry Imaging Experiments with Complex Designs.
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