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@UMEssen

University Medicine Essen

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  1. FHIR-PYrate FHIR-PYrate Public

    FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…

    Python 82 18

  2. SALT SALT Public

    Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.

    Python 82 7

  3. Body-and-Organ-Analysis Body-and-Organ-Analysis Public

    BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical …

    Python 78 14

  4. saros-dataset saros-dataset Public

    Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data

    Python 63 8

  5. DICOM-RST DICOM-RST Public

    DICOMweb-compatible gateway server with DIMSE and S3 implementations

    Rust 27 5

  6. dicom-deidentifier-ts dicom-deidentifier-ts Public

    TypeScript 12 1

Repositories

Showing 10 of 37 repositories
  • MumbleMED Public

    MumbleMED is developed by SHIP.AI group at the Institute for Artificial Intelligence in Medicine (IKIM) at the University Hospital Essen.

    UMEssen/MumbleMED's past year of commit activity
    Python 0 MIT 0 0 1 Updated Sep 9, 2026
  • Body-and-Organ-Analysis Public

    BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.

    UMEssen/Body-and-Organ-Analysis's past year of commit activity
    Python 78 Apache-2.0 14 3 1 Updated Sep 1, 2026
  • FireFly Public

    Source code repository for FireFly project

    UMEssen/FireFly's past year of commit activity
    0 0 0 0 Updated Aug 22, 2026
  • FHIR-PYrate Public

    FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.

    UMEssen/FHIR-PYrate's past year of commit activity
    Python 82 MIT 18 11 1 Updated Aug 20, 2026
  • DICOM-RST Public

    DICOMweb-compatible gateway server with DIMSE and S3 implementations

    UMEssen/DICOM-RST's past year of commit activity
    Rust 27 MIT 5 16 (1 issue needs help) 4 Updated Aug 18, 2026
  • Volcano-HL7-MLLP-Connector Public

    A high-performance HL7 v2 MLLP listener that converts healthcare messages to JSON and publishes them to Apache Kafka.

    UMEssen/Volcano-HL7-MLLP-Connector's past year of commit activity
    Scala 1 MIT 1 0 5 Updated Aug 16, 2026
  • DeidentiFHIR-Pipeline Public

    With the DeidentiFHIR-Pipeline, you can transfer FHIR based data from one source (e.g. a FHIR server) to a target (e.g. a FHIR server) and pseudonymize the data in between. Pseudonymization is based on the DeidentiFHIR library.

    UMEssen/DeidentiFHIR-Pipeline's past year of commit activity
    Java 2 MIT 0 1 6 Updated Aug 12, 2026
  • PIGEON Public

    This repository presents a reproducible framework for transforming structured FHIR data into synthetic German patient information texts. The generated corpus is used to fine-tune large language models for extracting structured medical information, providing a foundation for developing and evaluating clinical NLP applications.

    UMEssen/PIGEON's past year of commit activity
    Python 0 MIT 1 0 3 Updated Aug 4, 2026
  • SALT Public

    Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.

    UMEssen/SALT's past year of commit activity
    Python 82 MIT 7 2 2 Updated Aug 3, 2026
  • saros-dataset Public

    Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data

    UMEssen/saros-dataset's past year of commit activity
    Python 63 MIT 8 0 1 Updated Aug 3, 2026
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