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1. SeqNado SeqNado Public

   A unified and user-friendly collection of pipelines for: ATAC-seq, ChIP-seq, CUT&RUN/TAG, RNA-seq, WGS, Methylation (Bisulphite/TAPS), CRISPR screens and Micro-Capture-C.

   Python 8 3

2. TrackNado TrackNado Public

   Forked from alsmith151/TrackNado

   Command line utility to generate UCSC hubs from a set of files (e.g. bigWig, bigBed etc)

   Python

3. PlotNado PlotNado Public

   Forked from alsmith151/plotnado

   Generates UCSC style genome browser tracks using python code. Allows for easy automation of genome browser plots.

   Python

4. BamNado BamNado Public

   Forked from alsmith151/BamNado

   Fast BAM manipulation and pileup generation tools. Written in Rust with a python interface. Orders of magnitude faster than deepTools bamCoverage.

   Rust 2

5. QuantNado QuantNado Public

   QuantNado provides efficient Zarr-backed storage and analysis of genomic signal from BAM and bigWig files, with support for signal reduction, feature counting, dimensionality reduction, and quantil…

   Python 2 1

6. TabNado TabNado Public

   Forked from CChahrour/TabNado

   Predicts binding from epigenomic cofactors (ChIP-seq, CUT&TAG, CUT&RUN) over tiled TSS windows or user-defined BED regions, with support for both GANDALF (neural tabular) and XGBoost backends. Uses…

   Python