біофізинейрофізіокиця
Researcher at the University of Tübingen (Physiology Institute II — Garaschuk Lab), working on in vivo two-photon calcium imaging in the mouse V1 cortex and the pipelines to analyze it.
- In vivo awake two-photon calcium imaging (mouse primary visual cortex)
- End-to-end analysis pipelines: motion correction → segmentation → dF/F → event detection → tuning & population analysis → interactive reports
- Signal processing for calcium traces
| mesc-io · PyPI | Read Femtonics .mesc two-photon recordings in Python, in the units the native reader shows — every unit's metadata and stage position, export and write-back, and a browser viewer that draws ROIs and computes their dF/F. Tested on three platforms; pip install mesc-io. |
| bio-methods-gallery | Small, self-contained bio-imaging and bioinformatics methods. Each tile stands alone, runs in a minute on a synthetic example it generates itself, and answers one question against the established method — with tests and a before/after figure. |
| stimulus-runner | Browser (WebGL) grating presenter for visual physiology: seamless grey ↔ grating, queued protocols, a dual-screen operator panel, and corner pulse markers that write the played protocol into the recording. |
| stimulus-aligner | The other half of the loop: decodes those pulse markers back out of a recording and aligns the played protocol onto the frame-exact timeline. |
Together these close the loop of an experiment: the runner shows the stimulus and marks it into the recording, the aligner reads the marks back out, and mesc-io reads the recording itself.
- M.Sc. Molecular Physiology & Biophysics — Kyiv Academic University (2021–2023)
- B.Sc. Biology & Biotechnology — National University of Kyiv-Mohyla Academy (2017–2021)
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