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@LanLab

LanLab

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  1. ShigEiFinder ShigEiFinder Public

    Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies

    Python 14 2

  2. MGT_reads2alleles MGT_reads2alleles Public

    Pipeline for converting raw reads into alleles for submission to the MGT website

    Python 1

  3. STECFinder STECFinder Public

    Clustering and Serotyping of Shigatoxin producing E. coli (STEC) using genomic cluster specific markers

    Python 6 3

Repositories

Showing 10 of 18 repositories
  • Monotyper Public

    Tool for in silico serotyping of Listeria monocytogenes

    LanLab/Monotyper's past year of commit activity
    Python 0 0 0 0 Updated Jun 21, 2026
  • LMonitor Public

    WGS data analysis pipeline and visualisation dashboard for monitoring of Listeria monocytogenes in food production environments

    LanLab/LMonitor's past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Jun 21, 2026
  • campygstyper Public

    A python script for accurate assignment of ANI genomic species to Campylobacter genomes.

    LanLab/campygstyper's past year of commit activity
    Python 1 GPL-3.0 2 0 0 Updated Jun 9, 2026
  • C.jejuni-multilevel-HierCC-typing-scheme Public

    A workflow for accurate genotyping and surveillance of C.jejuni WGS genomes

    LanLab/C.jejuni-multilevel-HierCC-typing-scheme's past year of commit activity
    0 0 0 0 Updated Jan 12, 2026
  • Scripts-MGT-S-aureus Public

    Additional scripts supplementing the development of MGT for Staphylococcus aureus.

    LanLab/Scripts-MGT-S-aureus's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 23, 2025
  • dodge Public

    Dynamic Outbreak Detection for Genomic Epidemiology

    LanLab/dodge's past year of commit activity
    Python 4 GPL-3.0 3 0 0 Updated Sep 9, 2024
  • MGT-local Public

    Install a local blank version of the MGT database

    LanLab/MGT-local's past year of commit activity
    JavaScript 2 GPL-3.0 2 1 0 Updated Jun 6, 2024
  • debug-mpcr Public

    A script to examine amplicon sequencing of multiplex PCR assays

    LanLab/debug-mpcr's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 6, 2024
  • salty Public

    The Staphylococcus aureus Lineage Typer (SaLTy)

    LanLab/salty's past year of commit activity
    Python 7 GPL-3.0 0 0 0 Updated May 15, 2024
  • STECFinder Public

    Clustering and Serotyping of Shigatoxin producing E. coli (STEC) using genomic cluster specific markers

    LanLab/STECFinder's past year of commit activity
    Python 6 GPL-3.0 3 0 0 Updated Mar 19, 2024
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