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Laboratory for Metabolic Systems Engineering

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  1. Compound_Protein_Interac_Pred Compound_Protein_Interac_Pred Public

    Enzyme Activity Prediction of Sequence Variants onNovel Substrates using Improved Substrate Encodings and Convolutional Pooling

    Python 18 5

  2. impact impact Public

    Forked from nvenayak/impact

    The impact framework is designed to help scientists extract insight from experimental data in a transparent and reproducible fashion.

    Python 4 2

  3. aybrah aybrah Public

    Analyzing Yeasts by Reconstructing Ancestry of Homologs

    HTML 4 1

  4. fyrment fyrment Public

    Fungi pan-genome-scale network reconstruction

    Python 4 1

  5. Community_Gap-Filling Community_Gap-Filling Public

    Source code and input files for reproducing the results presented in "A gap-filling algorithm for prediction of metabolic interactions in microbial communities".

    MATLAB 4 1

  6. kinGEMs kinGEMs Public

    Forked from ranaabarghout/kinGEMs

    Jupyter Notebook 4 2

Repositories

Showing 10 of 54 repositories
  • DCAMFBA Public Forked from DafniGi/DCAMFBA

    adaptive mesh dynamic control Flux Balance Analysis (DCAMFBA)

    LMSE/DCAMFBA's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Sep 10, 2026
  • kinGEMs Public Forked from ranaabarghout/kinGEMs
    LMSE/kinGEMs's past year of commit activity
    Jupyter Notebook 4 MIT 4 0 0 Updated Jul 22, 2026
  • MAFBA Public
    LMSE/MAFBA's past year of commit activity
    MATLAB 1 1 0 0 Updated Mar 13, 2026
  • CHE222 Public

    Python Tutorials

    LMSE/CHE222's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 17, 2025
  • comMCS Public

    Code for implementing comMCS

    LMSE/comMCS's past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated Nov 28, 2025
  • ai-for-research Public

    A curated guide to AI tools that enhance research productivity

    LMSE/ai-for-research's past year of commit activity
    HTML 1 MIT 1 0 0 Updated Jun 12, 2025
  • Dehalobacter_modelling Public
    LMSE/Dehalobacter_modelling's past year of commit activity
    Python 0 1 0 0 Updated Jun 6, 2025
  • Quorum_sensingCrispri Public Forked from dev4105/Quorum_sensingCrispri
    LMSE/Quorum_sensingCrispri's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated May 15, 2025
  • Seq_to_Func_Pred_Model Public

    Sequence-to-Function Learning Predictive Model

    LMSE/Seq_to_Func_Pred_Model's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 21, 2024
  • eco2rr Public Forked from zhengau1/eco2rr

    Energy Efficiency Calculations for a Hybrid Electrochemical Reduction + Bioproduction CO2 Sequestration System

    LMSE/eco2rr's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jul 15, 2024
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