Issues

• Request from OUS bioinformatics: Errors from PRONTO for one sample should not stop the whole running of the scripts, error message should be printed and then continue running for the rest of the samples.

  Feature

  InPreD/PRONTO#101 · Filter by author xiaoliz0 opened on Feb 12, 2026
  

• refactor header not exist in table

  enhancement
  InPreD/PRONTO#59 · Filter by author marrip opened on Feb 28, 2025

• refactor sample info comment

  enhancement
  InPreD/PRONTO#58 · Filter by author marrip opened on Feb 28, 2025

• look into making spacing on ppt slides programatic

  enhancement
  InPreD/PRONTO#57 · Filter by author marrip opened on Feb 28, 2025

• config file should be yaml format

  InPreD/PRONTO#52 · Filter by author marrip opened on Feb 6, 2025

• All the textbox6 related commands could go to a new function called something like set_layout_textbox_tumor_content. Similarly, commands related to other textboxes could be split to smaller functions with meaningful naming.

  InPreD/PRONTO#47 · Filter by author xiaoliz0 opened on Jun 25, 2024

• It would be nice to separate 'graphical' and 'functional' parts of the code to separate functions. I know this is quite some work, but I also believe it would be worth from the perspective of readability.

  InPreD/PRONTO#46 · Filter by author xiaoliz0 opened on Jun 25, 2024

• just a practical question, why do not impress sites get an empty string "" and impress sites Inclusion site. Would it be better to maybe clearly state that it is impress or not? But I am not sure how you handle this downstream, maybe it will change a lot.

  InPreD/PRONTO#45 · Filter by author xiaoliz0 opened on Jun 25, 2024

• I understand that these are all column names? Maybe they can be collected in an object?

  InPreD/PRONTO#44 · Filter by author xiaoliz0 opened on Jun 25, 2024

• Suggestion from Tina

  InPreD/PRONTO#43 · Filter by author xiaoliz0 opened on Jun 18, 2024

• Typing error for "target_cod_region"

  InPreD/PRONTO#41 · Filter by author xiaoliz0 opened on Jun 18, 2024

• Extract the inclusion_site information from the code to config file.

  InPreD/PRONTO#39 · Filter by author xiaoliz0 opened on Jun 18, 2024
  1

• Move "import" module from function to the top of script.

  InPreD/PRONTO#38 · Filter by author xiaoliz0 opened on Jun 18, 2024

• Tumor content number provided multiple times for one sample set

  InPreD/PRONTO#37 · Filter by author tinavisnovska opened on May 3, 2024
  3