compteam_tools

A collection of custom scripts for everyday long read analysis

Name		Name	Last commit message	Last commit date
flagger_scripts		flagger_scripts
visualize_repeat_region		visualize_repeat_region
README.md		README.md
bam_conv		bam_conv
bedLength		bedLength
bedminmax.py		bedminmax.py
bedn.py		bedn.py
browserShotsFromSessionTextFile.py		browserShotsFromSessionTextFile.py
check_basecall.py		check_basecall.py
convert_ncdu_to_tsv.py		convert_ncdu_to_tsv.py
ebi_manifest.sh		ebi_manifest.sh
fastq.smk		fastq.smk
filter_external.py		filter_external.py
find_not_transferred.py		find_not_transferred.py
genomeArk-organize.sh		genomeArk-organize.sh
genomeArk-upload.sh		genomeArk-upload.sh
get_ont_stats.py		get_ont_stats.py
get_pb_stats.py		get_pb_stats.py
ideo_plot.py		ideo_plot.py
ideo_plot_flexible.py		ideo_plot_flexible.py
ideo_snv.py		ideo_snv.py
ideo_sv.py		ideo_sv.py
illumina_est.sh		illumina_est.sh
listFilesScript.py		listFilesScript.py
long_read_stats		long_read_stats
make_fasta.sh		make_fasta.sh
make_ntsm_summary_plot.py		make_ntsm_summary_plot.py
make_ont_fofn.py		make_ont_fofn.py
manual_mig.py		manual_mig.py
migrate_to_LRA.py		migrate_to_LRA.py
n50		n50
ng50		ng50
ont_len_eval.py		ont_len_eval.py
ont_stats		ont_stats
pav_bed9.py		pav_bed9.py
pav_summary.py		pav_summary.py
plot_circos_from_rustybamstats.R		plot_circos_from_rustybamstats.R
print_source_list_dockerhub.sh		print_source_list_dockerhub.sh
rename_fasta.py		rename_fasta.py
saffire_only.smk		saffire_only.smk
shareable		shareable
sv_len_alu.py		sv_len_alu.py
unswap_ont.py		unswap_ont.py
unswap_pb.py		unswap_pb.py

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