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@DavisLaboratory

Davis Laboratory

Computational systems oncology lab at the South Australian Immunogenomics Cancer Institute (SAiGENCI)

Popular repositories Loading

  1. singscore singscore Public

    An R/Bioconductor package that implements a single-sample molecular phenotyping approach

    R 51 7

  2. standR standR Public

    Spatial transcriptomics analyses and decoding in R

    R 27 6

  3. vissE vissE Public

    An R/Bioconductor package to identify higher-order molecular phenotypes

    R 19 1

  4. msImpute msImpute Public

    Methods for label-free mass spectrometry proteomics

    R 16

  5. scDECAF scDECAF Public

    Querying cellular states and programs by learning representations of gene sets

    R 16 3

  6. hoodscanR hoodscanR Public

    R 14

Repositories

Showing 10 of 49 repositories
  • smartid Public

    An R package for Scoring and Marker Selection Based on Modified TF-IDF

    DavisLaboratory/smartid's past year of commit activity
    R 1 1 0 0 Updated Aug 21, 2026
  • standR Public

    Spatial transcriptomics analyses and decoding in R

    DavisLaboratory/standR's past year of commit activity
    R 27 6 4 0 Updated Jul 8, 2026
  • mastR Public

    An R package for automatically screening cell type signature in specific tissue/organ/cancer.

    DavisLaboratory/mastR's past year of commit activity
    R 7 1 0 0 Updated May 20, 2026
  • msImpute Public

    Methods for label-free mass spectrometry proteomics

    DavisLaboratory/msImpute's past year of commit activity
    R 16 0 1 0 Updated May 13, 2026
  • hoodscanR Public
    DavisLaboratory/hoodscanR's past year of commit activity
    R 14 GPL-3.0 0 1 0 Updated Nov 12, 2025
  • scDECAF Public

    Querying cellular states and programs by learning representations of gene sets

    DavisLaboratory/scDECAF's past year of commit activity
    R 16 3 1 0 Updated Nov 2, 2025
  • scDECAF-reproducibility Public

    Code to reproduce figures for scDECAF manuscript

    DavisLaboratory/scDECAF-reproducibility's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 2, 2025
  • singscore Public

    An R/Bioconductor package that implements a single-sample molecular phenotyping approach

    DavisLaboratory/singscore's past year of commit activity
    R 51 7 5 (1 issue needs help) 0 Updated Oct 13, 2025
  • emtdata Public
    DavisLaboratory/emtdata's past year of commit activity
    R 2 GPL-3.0 3 1 0 Updated Nov 21, 2024
  • peptideprotonet_reproducibility Public

    Scripts and notebooks to reproduce figures for the peptideprotonet manuscript

    DavisLaboratory/peptideprotonet_reproducibility's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 18, 2024

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