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13 followers · 4 following
  • King Abdulaziz University
  • Saudi Arabia
  • LinkedIn in/babajan

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Achievement: Pair ExtraordinaireAchievement: Pull Sharkx2Achievement: YOLO

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Achievement: Pair ExtraordinaireAchievement: Pull Sharkx2Achievement: YOLO

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Babajan-B/README.md

Dr. Babajan Banaganapalli

Associate Professor of Genetic Medicine · King Abdulaziz University

Clinical bioinformatics  ·  AI in genomics  ·  Multiomics  ·  12+ years in research and teaching

Website Google Scholar LinkedIn YouTube Email

About

I build tools that take genomic data from raw reads to clinically interpretable results: NGS pipelines, variant interpretation, QC automation, and AI-assisted analysis. My research sits where human genetics meets machine learning, and most of what I write here is meant to be used by clinicians, students, and other researchers.

Open to: PhD supervision · research collaboration · bioinformatics consulting

Featured projects

Project What it does
Exome-Analysis-End-to-END One-command NGS pipeline: FASTQ to annotated variants
PrismBB-VCF · PrismBB-CentralDogma Genomics toolkit modules for VCF handling and sequence biology
BioQC-MCP MCP server that brings FastQC / MultiQC reporting to AI assistants
AlphaGenome AI-assisted genomic analysis platform
pubmed-search-engine PubMed search filtered to high-impact journals
phylogenetic_tree_app · Sequence-Search-Tool · genome-coordinate-converter Everyday utilities for phylogenetics, sequence search, and genome build liftover

More in Repositories.

Open-source contributions

ClawBio/ClawBio (1,000+ ★): four merged skills: cnv-acmg-classifier · phylogenetics-builder · pathway-enricher · bioqc-mcp

Tech stack

Languages
Python R SQL TypeScript Bash

Genomics
GATK ANNOVAR snpEff FastQC / MultiQC

Machine learning
PyTorch scikit-learn

Also published: Android apps Quran Urdu-English and Quran Telugu on Google Play.

GitHub activity

Contribution calendar in 3D

Generated daily by a GitHub Action in this repository.

Popular repositories Loading

  1. Exome-Analysis-End-to-END Exome-Analysis-End-to-END Public

    Automated end to end NGS exome analysis pipeline. One command from FASTQ to fully annotated variants with QC, alignment, GATK calling, ANNOVAR and snpEff annotation, functional classification, and …

    HTML 6 2

  2. PrismBB-VCF PrismBB-VCF Public

    PrismBB-Genomics

    TypeScript 6 1

  3. Babajan-B Babajan-B Public

    My personal GitHub profile

    1

  4. AI-News-Shelter AI-News-Shelter Public

    HTML 1 1

  5. BioQC-MCP BioQC-MCP Public

    Professional MCP server for FastQC and MultiQC quality control analysis with advanced visualization and report parsing

    Python 1

  6. Bioinformatics-Learning-Resources Bioinformatics-Learning-Resources Public

    Python 1